A Semi-Supervised Approach utilizing Deep Learning Pseudo-Label Refinement and Confidence Filtering for Enhanced Image Segmentation: An application towards Skin Lesion Analysis
DOI:
https://doi.org/10.22581/0742Keywords:
Medical Image Analysis, U-Net Architecture, Uncertainty filtering, Skin Lesion Segmentation, Conditional Random Field (CRF) Refinement, Semi-supervised Learning, Teacher-Student FrameworkAbstract
Accurate segmentation of skin lesions is an important step in diagnosing skin cancer. However, most segmentation methods based on deep learning rely heavily on large volumes of manually annotated images, which are both costly and difficult to obtain. This paper proposes a new framework for semi-supervised learning that effectively links an abundance of unlabelled thermoscopic images with a small, labelled dataset to improve the performance of segmentation. The framework integrates an architecture of Teacher-Student, where the Teacher network builds pseudo-labels for the unlabelled samples. The refinement of pseudo-labels is achieved through uncertainty-based filtering, which discards unreliable areas, and is further enhanced by Conditional Random Field (CRF) post-processing, which sharpens the lesion boundaries. The refined pseudo-labels are then utilised for training the student network, allowing for robust learning through both unlabelled and labelled data. Experiments on the HAM10000 and ISIC 2018 datasets indicate that the proposed model achieves an IoU of 0.64 and a Dice Coefficient of 0.74 with only 10 percent of labelled data. It was comparable to fully supervised training with 100 percent annotations. Qualitative outcomes suggest improved delineation of lesion boundary and decreased false segmentation. This research work demonstrates the potential of pseudo-label refinement as an effective strategy for addressing the scarcity of annotations in medical image segmentation.
Downloads
References
[1]. Ronneberger, O., Fischer, P., and Brox, T., 2015, October. U-net: Convolutional networks for biomedical image segmentation. In International Conference on Medical Image Computing and Computer-Assisted Intervention (pp. 234-241). Cham: Springer International Publishing.
[2]. Zhou, Z., Rahman Siddiquee, M.M., Tajbakhsh, N., and Liang, J., 2018, September. Unet++: A nested U-Net architecture for medical image segmentation. In International workshop on deep learning in medical image analysis (pp. 3-11). Cham: Springer International Publishing.
[3]. Oktay, O., Schlemper, J., Folgoc, L.L., Lee, M., Heinrich, M., Misawa, K., Mori, K., McDonagh, S., Hammerla, N.Y., Kainz, B. and Glocker, B., 2018. Attention U-Net: Learning where to look for the pancreas. arXiv preprint arXiv:1804.03999.
[4]. Zhu, M., Zhang, L., Wang, L., Li, D., Zhang, J. and Yi, Z., 2023. Robust co-teaching learning with consistency-based noisy label correction for medical image classification. International Journal of Computer Assisted Radiology and Surgery, 18(4), pp.675-683.
[5]. Sarfati, E., 2025. Exploitation of heterogeneous labels in deep learning for medical image analysis: applications to automated diagnosis of liver diseases (Doctoral dissertation, Institut Polytechnique de Paris).
[6]. Zhang, J., You, S., Liu, A., Xie, L., Huang, C., Han, X., Li, P., Wu, Y. and Deng, J., 2024. Winter wheat mapping method based on Pseudo-labels and a U-Net model for training sample shortage. Remote Sensing, 16(14), p.2553.
[7]. Shuai, Z., Chen, Y., Mao, S., Zhou, Y., and Zhang, X., 2024. Diffseg: a segmentation model for skin lesions based on diffusion difference. arXiv preprint arXiv:2404.16474.
[8]. Chatterjee, P., Sharma, K.D., and Chakrabarti, A., 2025. Refining Pseudo Labels with a Teacher-Student Paradigm for Accurate Brain Lesion Segmentation. IEEE Access.
[9]. Ronneberger, O., Fischer, P., and Brox, T., 2015, October. U-net: Convolutional networks for biomedical image segmentation. In International Conference on Medical Image Computing and Computer-Assisted Intervention (pp. 234-241). Cham: Springer International Publishing.
[10]. Oktay, O., Schlemper, J., Folgoc, L.L., Lee, M., Heinrich, M., Misawa, K., Mori, K., McDonagh, S., Hammerla, N.Y., Kainz, B. and Glocker, B., 2018. Attention U-Net: Learning where to look for the pancreas. arXiv preprint arXiv:1804.03999.
[11]. Esteva, A., Kuprel, B., Novoa, R.A., Ko, J., Swetter, S.M., Blau, H.M. and Thrun, S., 2017. Dermatologist-level classification of skin cancer with deep neural networks. nature, 542(7639), pp.115-118.
[12]. Bai, W., Oktay, O., Sinclair, M., Suzuki, H., Rajchl, M., Tarroni, G., Glocker, B., King, A., Matthews, P.M., and Rueckert, D., 2017, September. Semi-supervised learning for network-based cardiac MR image segmentation. In International Conference on Medical Image Computing and Computer-Assisted Intervention (pp. 253-260). Cham: Springer International Publishing.
[13]. Li, X., Yu, L., Chen, H., Fu, C.W., Xing, L., and Heng, P.A., 2020. Transformation-consistent self-ensembling model for semisupervised medical image segmentation. IEEE Transactions on Neural Networks and Learning Systems, 32(2), pp.523-534.
[14]. Kendall, A. and Gal, Y., 2017. What uncertainties do we need in Bayesian deep learning for computer vision?. Advances in neural information processing systems, 30.
[15]. Gal, Y. and Ghahramani, Z., 2016, June. Dropout as a Bayesian approximation: Representing model uncertainty in deep learning. In International Conference on Machine Learning (pp. 1050-1059). PMLR.
[16]. Milton, M.A.A., 2019. Automated skin lesion classification using an ensemble of deep neural networks in ISIC 2018: Skin lesion analysis towards melanoma detection challenge. arXiv preprint arXiv:1901.10802.
[17]. Tschandl, P., Rosendahl, C. and Kittler, H., 2018. The HAM10000 dataset is a large collection of multi-source dermatoscopic images of common pigmented skin lesions. Scientific data, 5(1), pp.1-9.
[18]. Wang, Z., Wang, P., Liu, K., Wang, P., Fu, Y., Lu, C.T., Aggarwal, C.C., Pei, J., and Zhou, Y., 2025. A comprehensive survey on data augmentation. IEEE Transactions on Knowledge and Data Engineering.
[19]. Razavi, M., Mavaddati, S. and Koohi, H., 2024. ResNet deep models and transfer learning technique for classification and quality detection of rice cultivars. Expert Systems with Applications, 247, p.123276.
[20]. Leonardi, R., Giudice, A.L., Farronato, M., Ronsivalle, V., Allegrini, S., Musumeci, G. and Spampinato, C., 2021. Fully automatic segmentation of sinonasal cavity and pharyngeal airway based on convolutional neural networks. American Journal of Orthodontics and Dentofacial Orthopedics, 159(6), pp.824-835.
[21]. Hosseini, S.M. and Baghshah, M.S., 2024. Dilated balanced cross-entropy loss for medical image segmentation. arXiv preprint arXiv:2412.06045.
[22]. Xu, W., Yuan, K., Li, W., and Ding, W., 2022. An emerging fuzzy feature selection method using composite entropy-based uncertainty measure and data distribution. IEEE Transactions on Emerging Topics in Computational Intelligence, 7(1), pp.76-88.
[23]. Zhu, J., Huang, H., Li, B., and Wang, L., 2021. E-CRF: Embedded conditional random field for boundary-caused class weights confusion in semantic segmentation. arXiv preprint arXiv:2112.07106.
[24]. Ataş, İ., 2023. Performance evaluation of the Jaccard-Dice coefficient on building segmentation from high-resolution satellite images. Balkan Journal of Electrical and Computer Engineering, 11(1), pp.100-106.
Published
Issue
Section
License
Copyright (c) 2026 Mehran University Research Journal of Engineering and Technology

This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
How to Cite
Similar Articles
- Syed Shabeeb Raza, Muhammad Imran Saleem, Hassan Ahmed Khan, Shaheena Noor, Ali Yousuf Khan, Eman Razzaq, A Comparative Analysis of Software-Defined Networking (SDN) Security Policies With and Without Reinforcement Learning Automation , Mehran University Research Journal of Engineering and Technology: Vol. 45 No. 2 (2026): April Issue
- Abdul Rehman, Habib ur Rehman, Noor Muhammad Khan, Machine Learning Based Prediction of Hydraulic Jump Lengths in Stilling Basins for Barrages and Low-Head Hydraulic Structures , Mehran University Research Journal of Engineering and Technology: Vol. 45 No. 1 (2026): January Issue
- Saifullah Samo, Sameh EZZT Mohamed Ali Bdran, Raheel Ahmed Nizamani, Zero-Shot Payload Adaptation for Robotic Manipulators via Domain-Randomized Deep Reinforcement Learning , Mehran University Research Journal of Engineering and Technology: Vol. 45 No. 2 (2026): April Issue
- Beenish Ayesha Akram , Muhammad Irfan , Amna Zafar , Sidra Khan , Rubina Shaheen , Impact of computing platforms on classifier performance in heart disease prediction , Mehran University Research Journal of Engineering and Technology: Vol. 44 No. 2 (2025): April Issue
- Saima Bhatti, Asif Mansoor, Obaidullah Khan, Asif Ali Shaikh, A Finite Element Simulation for the Analysis of Ball Bearing Contact and Fatigue Using Goodman Theory , Mehran University Research Journal of Engineering and Technology: Vol. 45 No. 3 (2026): July Issue
- Muhammad Rehan Saleem, Amjad Hussain Zahid, Ghulam Mustafa, Dynamic S-box construction based on a novel chaotic map and twitching approach , Mehran University Research Journal of Engineering and Technology: Vol. 44 No. 4 (2025): October Issue
- Umaima Saleem Memon, Mehwish Shahzad Abbasi, Ghulam Qadir Chanihoon, Sidra Khan, Murk Saleem, Development of Highly Stable Ofloxacin-Capped Silver Nanoparticles as a Novel Nanoplatform for Vermox Detection in Biological and Environmental Systems , Mehran University Research Journal of Engineering and Technology: Vol. 45 No. 3 (2026): July Issue
- Muhammad Raheel Bawani, Waqas Anjum, Sikander Almani, Ali Hassan, Ramez Raja, Noor Muhammad Lashari, Improving the iron grade of indigenous laterite ore through gravity and magnetic separation , Mehran University Research Journal of Engineering and Technology: Vol. 44 No. 3 (2025): July Issue
- Zahid Hussain Khaskheli , Qasim Ali, M Shehram Shah , Din Muhammad , Farast Ali, Hina Ali, Maria Khalid, Zoha Waheed, Umer Gaffar, Improving Human Action Recognition Through Cross-View Camera-Aware Augmentation , Mehran University Research Journal of Engineering and Technology: Vol. 45 No. 3 (2026): July Issue
- Ruhal Pervez Memon, Alyas Khan Mandokhail, Jabir Hussain Memon, Muhammad Noor Kakar, Irfan Ali Chandio, Gohar Nadeem, Mechanical and thermal analysis of self-curing concrete modified with polyethylene glycol-400 , Mehran University Research Journal of Engineering and Technology: Vol. 44 No. 3 (2025): July Issue
You may also start an advanced similarity search for this article.